Bioinformatic Tools and Databases

MAISEN active
Mikolaj Dziurzynski, Przemyslaw Decewicz, Karol Ciuchcinski, Adrian Gorecki, Lukasz Dziewit
Released: 2024 License: Other
MAISEN is a web tool dedicated to the annotation of bacterial and archeal nucleotide sequences. It allows you to browse structural and …
Plasmids of psychrotolerant bacteria in-development
Zofia Godlewska, Przemyslaw Decewicz, Lukasz Dziewit
Released: 2023 License: MIT
Sequences of plasmids from cold-active bacteria from Nucleotide database (NCBI) in fasta format.
LCPDb-MGE – database of PCR primers for identification of mobile genetic elements in-development
Zofia Godlewska, Przemyslaw Decewicz, Lukasz Dziewit
Released: 2023 License: MIT
The database of PCR primers was based on a systematic literature review of articles in PubMed. It Contains information about starter …
Mobile genetic elements of psychrotolerant prokaryotes in-development
Przemyslaw Decewicz, Lukasz Dziewit
Released: 2023 License: MIT

Here, we present a set of manually curated datasets of prokaryotic psychrotolerant genomes, their plasmids and metagenomes from cold …

SigMa in-development
Przemyslaw Decewicz
Released: 2023 License: MIT
SigMa was designed for iterative prophage identification in bacterial genomes. It is meant to allow the incorporation of validated …
Literature-based, manually-curated database of PCR primers active
Adrian Gorecki, Przemyslaw Decewicz, Mikolaj Dziurzynski, Monika Janeczko, Lukasz Drewniak, Lukasz Dziewit
Released: 2019 License: MIT
A literature-based, manually-curated database of PCR primers for the detection of antibiotic resistance genes is comprised of hundreds …
DOI
Alphaproteobacteria (pro)phages Database deprecated
Przemyslaw Decewicz, Monika Radlinska, Lukasz Dziewit
Released: 2019 License: MIT
This projects aims to construct interactive website database for all known and publicly available active phages and manually verified …
Phages Prophages Sinorhizobium phages Paracoccus prophages
Stress response genes database deprecated
Adrian Gorecki, Lukasz Dziewit
Released: 2019 License: MIT
A manually curated database of stress response genes was created to annotate genes of plasmid DNA extracted from metaplasmidomes from …