Interests
- bioinformatics
- (meta)genomics
- manual annotation
- environmental survailance
Education
PhD in Biological Sciences, 2020
University of Warsaw, Faculty of Biology
MSc in Biotechnology, 2016
University of Warsaw, Faculty of Biology
BSc in Bioinformatics and Systems Biology, 2014
University of Warsaw, Faculty of Mathematics, Informatics and Mechanics
Latest
- Genome-guided development of a bacterial two-strain system for low-temperature soil biocementationApplied Microbiology and Biotechnology , 109, 66 (2025)
- The skin mycobiome of patients with atopic dermatitis and healthy volunteers: A case-control studyExperimental Dermatology , 34, e70085 (2025)
- Comparative analysis of Legionella lytica genome identifies specific metabolic traits and virulence factorsScientific Reports , 15, 5554 (2025)
- Genome-wide comparative analysis of clinical and environmental strains of the opportunistic pathogen Paracoccus yeei (Alphaproteobacteria)Frontiers in Microbiology , 10, 1483110 (2024)
- MAISENSoftware (2024)
- Spoligotyping of Mycobacterium tuberculosis – Comparing in vitro and in silico approachesInfection, Genetics and Evolution , 115, 105508 (2023)
- Plasmids of psychrotolerant bacteriaSoftware (2023)
- LCPDb-MGE – database of PCR primers for identification of mobile genetic elementsSoftware (2023)
- Mobile genetic elements of psychrotolerant prokaryotesSoftware (2023)
- Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: Characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active bacteriaJournal of Applied Genetics , 64, 545-557 (2023)
- SigMaSoftware (2023)
- Revealing the diversity of bacteria and fungi in the active layer of permafrost at Spitsbergen island (Arctic) – Combining classical microbiology and metabarcoding for ecological and bioprospecting exploration.Science of the Total Environment , 856, 159072 (2023)
- Heterologous production and characterization of a pyomelanin of Antarctic Pseudomonas sp. ANT_H4: A metabolite protecting against UV and free radicals, interacting with iron from minerals and exhibiting priming properties toward plant hairy rootsMicrobial Cell Factories , 21, 261 (2022)
- Characteristics and comparative genomic analysis of a novel virus, VarioGold, the first bacteriophage of VariovoraxInternational Journal of Molecular Sciences , 23, 13539 (2022)
- Draft genome sequence of Arctic, heavy metal-resistant Agrococcus sp. strain ARC_14 isolated from active layer of permafrost from Spitsbergen (Norway)Microbiology Resource Announcements , 11, e00221-22 (2022)
- Development and validation of novel PCR primers for identification of plasmid-mediated colistin resistance (mcr) genes in various environmental settingsJournal of Hazardous Materials , 425, 127936 (2022)
- Application of psychrotolerant Antarctic bacteria and their metabolites as efficient plant growth promoting agentsFrontiers in Bioengineering and Biotechnology , 10, 772891 (2022)
- Simple, reliable, and time-efficient manual annotation of bacterial genomes with MAISENIn: Methods in Molecular Biology: Bacterial Pangenomics, second edition , Ed. by A. Mengoni, G. Bacci, M. Fondi , Springer Protocols/Humana Press (2021)
- Effect of clinoptilolite and halloysite addition on biogas production and microbial community structure during anaerobic digestionMaterials , 13, 4127 (2020)
- Identification and characterization of the first virulent phages, including a novel jumbo virus, infecting Ochrobactrum spp.International Journal of Molecular Sciences , 21, 2096 (2020)
- Literature-based, manually-curated database of PCR primers for the detection of antibiotic resistance genes in various environmentsWater Research , 161, 211-221 (2019)
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphageNature Microbiology , 4, 1727-1736 (2019)
- Is bacterial microbiome from the Polemonium caeruleum L. (Polemoniaceae) nectar geographically variable?Acta Societatis Botanicorum Poloniae , 88, 3626 (2019)
- Literature-based, manually-curated database of PCR primersSoftware (2019)
- Characterization of the virome of Paracoccus spp. (Alphaproteobacteria) by combined in silico and in vivo approachesScientific Reports , 9, 7899 (2019)
- Alphaproteobacteria (pro)phages DatabaseSoftware (2019)
- Molecular characterization of the pA3J1 plasmid from the psychrotolerant Antarctic bacterium Pseudomonas sp. ANT_J3Plasmid , 92, 49-56 (2017)
- Characterization of Sinorhizobium sp. LM21 prophages and virus-encoded DNA methyltransferases in the light of comparative genomic analyses of the sinorhizobial viromeViruses , 9, 161 (2017)
- Application of metagenomic analyses in dentistry as a novel strategy enabling complex insight into microbial diversity of the oral cavityPolish Journal of Microbiology , 66, 9-15 (2017)
- Molecular characterization of the pSinB plasmid of the arsenite oxidizing, metallotolerant Sinorhizobium sp. M14 – insight into the heavy metal resistome of sinorhizobial extrachromosomal repliconsFEMS Microbiology Ecology , 93, fiw215 (2017)