Latest

• Computational pipeline for sustainable enzyme discovery through (re)use of metagenomic data
  Journal of Environmental Management , 382, 125381 (2025)
• Genome-guided development of a bacterial two-strain system for low-temperature soil biocementation
  Applied Microbiology and Biotechnology , 109, 66 (2025)
• Engineered magnetic particles derived from steelmaking dust for phosphorus recovery and extracellular DNA removal from municipal wastewater
  Journal of Environmental Management , 380, 124830 (2025)
• Comparative analysis of Legionella lytica genome identifies specific metabolic traits and virulence factors
  Scientific Reports , 15, 5554 (2025)
• Method of obtaining a highly purified homogentisic acid polymer
  Patent No: Pat.246731 (2024)
• MAISEN
  Software (2024)
• Landscape of the metaplasmidome of deep-sea hydrothermal vents located at Arctic Mid-Ocean Ridges in the Norwegian–Greenland Sea: ecological insights from comparative analysis of plasmid identification tools
  FEMS Microbiology Ecology , 100, fiae124 (2024)
• Method of producing a fluorosilicate material from the hieratite group from fly ashes
  Patent No: Pat.245754 (2024)
• Nanoscale surface defects of goethite governing DNA adsorption process and formation of the Goethite-DNA conjugates
  Chemosphere , 362, 142602 (2024)
• Diversity of antibiotic resistance gene variants at subsequent stages of the wastewater treatment process revealed by a metagenomic analysis of PCR amplicons
  Frontiers in Genetics , 14, 1334646 (2024)
• Plasmids of psychrotolerant bacteria
  Software (2023)
• LCPDb-MGE – database of PCR primers for identification of mobile genetic elements
  Software (2023)
• Mobile genetic elements of psychrotolerant prokaryotes
  Software (2023)
• Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: Characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active bacteria
  Journal of Applied Genetics , 64, 545-557 (2023)
• Biopriming of seed with plant growth promoting bacteria for improved germination and seedling growth
  Frontiers in Microbiology , 14, 1142966 (2023)
• Revealing the diversity of bacteria and fungi in the active layer of permafrost at Spitsbergen island (Arctic) – Combining classical microbiology and metabarcoding for ecological and bioprospecting exploration.
  Science of the Total Environment , 856, 159072 (2023)
• New strains of psychrotolerant bacteria, a composition, their application and method of soil bioaugmentation
  Patent No: Pat.242616 (2023)
• Heterologous production and characterization of a pyomelanin of Antarctic Pseudomonas sp. ANT_H4: A metabolite protecting against UV and free radicals, interacting with iron from minerals and exhibiting priming properties toward plant hairy roots
  Microbial Cell Factories , 21, 261 (2022)
• Development and validation of novel PCR primers for identification of plasmid-mediated colistin resistance (mcr) genes in various environmental settings
  Journal of Hazardous Materials , 425, 127936 (2022)
• Application of psychrotolerant Antarctic bacteria and their metabolites as efficient plant growth promoting agents
  Frontiers in Bioengineering and Biotechnology , 10, 772891 (2022)
• Monitoring antibiotic resistance genes in wastewater environments: The challenges of filling a gap in the One-Health cycle
  Journal of Hazardous Materials , 424, 127407 (2022)
• Metaplasmidome-encoded functions of Siberian low-centered polygonal tundra soils
  The ISME Journal , 15, 3258-3270 (2021)
• Simple, reliable, and time-efficient manual annotation of bacterial genomes with MAISEN
  In: Methods in Molecular Biology: Bacterial Pangenomics, second edition , Ed. by A. Mengoni, G. Bacci, M. Fondi , Springer Protocols/Humana Press (2021)
• Method of asphalt foaming using a two-ingredient additive
  Patent No: Pat.237069 (2020)
• Effect of clinoptilolite and halloysite addition on biogas production and microbial community structure during anaerobic digestion
  Materials , 13, 4127 (2020)
• Literature-based, manually-curated database of PCR primers for the detection of antibiotic resistance genes in various environments
  Water Research , 161, 211-221 (2019)
• Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
  Nature Microbiology , 4, 1727-1736 (2019)
• Exploring the genome of Arctic Psychrobacter sp. DAB_AL32B and construction of novel Psychrobacter-specific cloning vectors of an increased carrying capacity
  Archives of Microbiology , 201, 559-569 (2019)
• Is bacterial microbiome from the Polemonium caeruleum L. (Polemoniaceae) nectar geographically variable?
  Acta Societatis Botanicorum Poloniae , 88, 3626 (2019)
• Literature-based, manually-curated database of PCR primers
  Software (2019)
• Characterization of the virome of Paracoccus spp. (Alphaproteobacteria) by combined in silico and in vivo approaches
  Scientific Reports , 9, 7899 (2019)
• Alphaproteobacteria (pro)phages Database
  Software (2019)
• Stress response genes database
  Software (2019)
• Insight into the diversity and possible role of plasmids in the adaptation of psychrotolerant and metalotolerant Arthrobacter spp. to extreme Antarctic environments
  Frontiers in Microbiology , 9, 3144 (2018)
• Plasmid pCRT01 and its structure, new bacterial strains, their applications method for producing carotenoids
  Patent No: Pat.231220 (2018)
• Lipo-Prep - microbiological preparation for catalyzing degradation of proteins, fats and hardly degradable organic compounds
  Patent No: Pat.229447 (2018)
• Genetyka prokariotów (Genetics of prokaryotes)
  In: Mikrobiologia (Microbiology) , Ed. by J. Baj , Wydawnictwo naukowe PWN (2018)
• Metody stosowane w mikrobiologii (Methods in microbiology)
  In: Mikrobiologia (Microbiology) , Ed. by J. Baj , Wydawnictwo naukowe PWN (2018)
• Molecular characterization of the pA3J1 plasmid from the psychrotolerant Antarctic bacterium Pseudomonas sp. ANT_J3
  Plasmid , 92, 49-56 (2017)
• Characterization of Sinorhizobium sp. LM21 prophages and virus-encoded DNA methyltransferases in the light of comparative genomic analyses of the sinorhizobial virome
  Viruses , 9, 161 (2017)
• Genome-based insights into the resistome and mobilome of multidrug-resistant Aeromonas sp. ARM81 isolated from wastewater
  Archives of Microbiology , 199, 177-183 (2017)
• Heavy metals resistance, metabolism and transformation – genomic, metagenomic and metatranscriptomic studies
  In: Microbial biodegradation: from omics to function and application , Ed. by J. Dlugonski , Caister Academic Press (2016)
• Two novel temperate bacteriophages co-existing in Aeromonas sp. ARM81 – characterization of their genomes, proteomes and DNA methyltransferases
  Journal of General Virology , 97, 2008-2022 (2016)
• Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti
  Nature Communications , 7, 12219 (2016)
• Two inducible prophages of an Antarctic Pseudomonas sp. ANT_H14 use the same capsid for packaging their genomes – characterization of a novel phage helper-satellite system
  PLOS One , 11, e0158889 (2016)
• Identification and characterization of putative integron-like elements of the heavy metal-hypertolerant strains of Pseudomonas spp.
  Journal of Microbiology and Biotechnology , 26, 1993–2002 (2016)
• Identification of miniature plasmids in psychrophilic Arctic bacteria of the genus Variovorax
  FEMS Microbiology Ecology , 92, fiw043 (2016)
• Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686
  Frontiers in Microbiology , 6, 852 (2015)
• Diversity and global distribution of IncL/M plasmids enabling horizontal dissemination of ß-lactam resistance genes among the Enterobacteriaceae
  Biomed Research International , 2015, 414681 (2015)
• Novel molecular markers for the detection of methanogens and phylogenetic analyses of methanogenic communities
  Frontiers in Microbiology , 6, 694 (2015)
• Maintenance and genetic load of plasmid pKON1 of Paracoccus kondratievae, containing a highly efficient toxin–antitoxin module of the hipAB family
  Plasmid , 80, 45-53 (2015)
• Diversity of the Epsilonproteobacteria Dsb (disulfide bond) systems
  Frontiers in Microbiology , 6, 570 (2015)
• Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals
  Frontiers in Microbiology , 6, 152 (2015)
• Comparative analyses of extrachromosomal bacterial replicons, identification of chromids and experimental evaluation of their indispensability
  In: Methods in Molecular Biology: Bacterial Pangenomics , Ed. by A. Mengoni, M. Galardini, M. Fondi , Springer Protocols/Humana Press (2015)
• Differentiation of spa types and staphylococcal cassette chromosome mec (SCCmec) in clinical methicillin-resistant Staphylococcus aureus isolated in medical sites of Gdańsk region
  Medycyna Doswiadczalna i Mikrobiologia , 67, 79-88 (2015)
• Pozycja filogenetyczna bakterii i zasady ich taksonomii (Phylogenetic position of bacteria and the rules of their taxonomy)
  In: Biologia molekularna bakterii (Molecular biology of bacteria) , Ed. by J. Baj, Z. Markiewicz , Wydawnictwo naukowe PWN (2015)
• Molecular characterization of a novel temperate Sinorhizobium bacteriophage ФLM21, encoding DNA methyltransferase with CcrM-like specificity
  Journal of Virology , 88, 13111-13124 (2014)
• Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments
  Frontiers in Microbiology , 5, 596 (2014)
• Screening for streptomycin resistance-conferring mutations in Mycobacterium tuberculosis clinical isolates from Poland
  PLOS One , 9, e100078 (2014)
• Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids
  BMC Genomics , 15,124 (2014)
• Nanostructured silver-gold bimetallic SERS substrate for selective identification of bacteria in human blood
  Analyst , 139, 1037-1043 (2014)
• Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) – structure, diversity and evolution
  PLOS One , 8, e80258 (2013)
• Sequence determination and analysis of three plasmids of Pseudomonas sp. GLE121, a psychrophile isolated from surface ice of Ecology Glacier (Antarctica)
  Plasmid , 70, 254-262 (2013)
• Structural and functional genomics of plasmid pSinA of Sinorhizobium sp. M14 encoding genes for the arsenite oxidation and arsenic resistance
  Journal of Biotechnology , 164, 479-488 (2013)
• Characterization of Halomonas sp. ZM3 isolated from the Zelazny Most post-flotation waste reservoir, with a special focus on its mobile DNA
  BMC Microbiology , 13, 59 (2013)
• Plasmid diversity in Arctic strains of Psychrobacter spp.
  Extremophiles , 17, 433-444 (2013)
• Plasmid pP62BP1 of an Arctic strain of Psychrobacter sp. carries two highly homologous type II restriction-modification systems and a putative operon for the organic sulfates metabolism
  Extremophiles , 16, 363-376 (2012)
• Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria)
  PLOS One , 7, e32277 (2012)
• Functional characterization of the type II PamI restriction-modification system derived from plasmid pAMI7 of Paracoccus aminophilus JCM 7686
  FEMS Microbiology Letters , 324, 56-63 (2011)
• DIY series of genetic cassettes useful in construction of versatile vectors specific for Alphaproteobacteria
  Journal of Microbiological Methods , 86: 166-174 (2011)
• Prokaryotic genomes in the light of genomic analyses
  Postepy Mikrobiologii , 50, 87-96 (2011)
• Plasmid pAMI2 of Paracoccus aminophilus JCM 7686 carries N,N-dimethylformamide degradation-related genes whose expression is activated by a LuxR family regulator
  Applied and Environmental Microbiology , 76, 1861-1869 (2010)
• Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12
  Journal of Bacteriology , 190, 3306-3313 (2008)
• SXT conjugative element and linear prophage N15 encode novel type of toxin-antitoxin stabilizing systems homologous to the tad-ata module of Paracoccus aminophilus plasmid pAMI2
  Journal of Bacteriology , 189, 1983-1997 (2007)