Laboratory of Applied
Microbial Ecology

Biomonitoring and Bioprospecting
Our research focuses on extremophilic bacteria, particularly psychrotolerants from Arctic and Antarctic regions, metallotolerants, and strains resistant to toxic compounds (including antibiotics). Using structural and functional genomics, we investigate their metabolic pathways and resistance mechanisms, with an emphasis on whole-genome sequencing and mobile genetic elements (MGEs). We apply advanced computational analyses to explore the ecological and evolutionary roles of MGEs and their biogeography.

We assess the taxonomic and functional diversity of microbial communities in pristine and anthropogenically-shaped environments, aiming to understand adaptation and seasonal microbiome dynamics. One of the key research areas is the ecological and molecular characterization of antibiotic resistance, supported by our custom-developed bioinformatic tools and curated databases.

We also conduct biomonitoring studies focused on the detection and analysis of pathogens, antibiotic resistance genes, and virulence factors across diverse environments. These efforts support applications in both human and veterinary medicine, enhancing our understanding of the environmental reservoirs and transmission routes of clinically relevant traits.

In parallel, we engage in bioprospecting of extreme environments for microbial strains, novel enzymes, and metabolites with high biotechnological potential, including their applications in regenerative agriculture and environmental biotechnologies.

Latest Papers

The occurrence and removal of antibiotic residues and antibiotic resistance genes in the largest European constructed wetland at Orhei (Moldova)
Mikolaj Wolacewicz, Przemyslaw Decewicz, Maria Eugenia Valdes, Oana-Simina Iaconi, Mihail Todiras, Alina Ferdohleb, Sara Rodriguez-Mozaz, Carles M. Borrego, Lukasz Dziewit
Environmental Pollution, 128381 (2026)
Gelidimonas denitrificans gen. nov., sp. nov., and Gelidimonas diazotrophica sp. nov. psychrophilic bacteria involved in the nitrogen cycle in tundra soils of South Spitsbergen
Jakub Grzesiak, Julia Brzykcy, Peter Young, Elvira Krakowska, Robert Stasiuk, Kamil Krakowski, Przemyslaw Decewicz, Alina Kiedrynska, Renata Matlakowska, Dariusz Bartosik
Systematic and Applied Microbiology, 49: 126730 (2026)
Plant–pollinator interactions and floral and nectar traits shape the diversity of the nectar mycobiome
Kamil Kislo, Marcin Mazurkiewicz, Bartlomiej Starzynski, Marcin Zych, Mikolaj Wolacewicz, Andrzej Bajguz, Magdalena Chmur, Katarzyna Roguz
Scientific Reports, 16: 13253 (2026)

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